Tutorial align using bwa mem

(none)
component script parameter value
bwa-mem run-command script version master
command ["$(dir $(bwa_collection))/bwa", "mem", "-t", "$(node.cores)", "-R", "@RG\tID:group_id\tPL:illumina\tSM:sample_id", "$(glob $(dir $(reference_collection))/*.fasta)", "$(glob $(dir $(sample))/*_1.fastq)", "$(glob $(dir $(sample))/*_2.fastq)"]
reference_collection (none)
bwa_collection 39c6f22d40001074f4200a72559ae7eb+5745
sample (none)
task.stdout $(basename $(glob $(dir $(sample))/*_1.fastq)).sam